MorphoDig

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MorphoDig User Guide

The Latex source code of the User Guide is available on Github
MorphoDig User Guide 1.5.1 

Description

    MorphoDig User Guide 1.5.1 


file:
UserGuide



MorphoDig Tutorials

Visit also our tutorial video channel
Tutorial 01 : landmark digitization on surfaces. 

Difficulty:

Description

    Tutorial 01 includes:

    • One .vtp surface file representing a skull of Mus musculus
    • Online instructions regarding landmark digitization with MorphoDig: https://youtu.be/594ySg8i3rY
     


More infos
file:
Tutorial_data
Tutorial 02: curve digitization. 

Difficulty:

Description

    This tutorial contains:

    • One .vtk surface file representing a right inner ear of Galago sp.
    • One .pos file (position file)
    • One .ver file (curve node landmarks file)
    • One .ori file (orientation helper labels)
    • One .stv file (curve node and handle landmarks file)
    • One .ntw file (MorphoDig project file)
    • Instructions regarding curve digitization with MorphoDig
    • One Youtube video: https://youtu.be/yexvIRsX598

      


More infos
2 files:
Tutorial_instructions
Tutorial_data
Tutorial 03: working with many surface objects

Difficulty:

Description

    Tutorial 03 includes:

    • A series of 74 .vtk surface files, each representing a bone belonging to Canariomys bravoi
    • Two series of 74 .pos files
    • One .ori file
    • Two .ntw files (MorphoDig project files)
    • Instructions regarding working with multiple surface files with MorphoDig
    • One video: https://youtu.be/Gfwy7GiIblA
     


More infos
2 files:
Tutorial_instructions
Tutorial_data
Tutorial 04: working with tags

Difficulty:

Description

    Tutorial 04 includes:

    • One .vtk surface file representing a right inner ear of Galago sp
    • One .pos file
    • One .ntw file
    • One .tgp file (tag map file)
    • One .ori file
    • Instructions regarding tag digitization with MorphoDig
    • One youtube video: https://youtu.be/PflTo7xn4QI
     


More infos
2 files:
Tutorial_data
Tutorial_instructions
Tutorial 05: working with flags

Difficulty:

Description

    Tutorial 05 includes:

    • One .vtk surface file representing a right inner ear of Galago sp
    • One .pos file
    • One .ntw file (MorphoDig project file)
    • One .flg file (flags)
    • One .ori file
    • Instructions regarding flag digitization with MorphoDig
    • One youtube video https://youtu.be/cyN3W4hXuFs
     


More infos
2 files:
Tutorial_data
Tutorial_instructions
Tutorial 06: working with tags part 2 (tagging objects containing unconnected regions). 

Difficulty:

Description

    Tutorial 06 includes:

    • One .vtk surface file representing a right inner ear of Mus musculus
    • One .pos file
    • One .ntw file
    • One .tag file
    • One .ori file
    • Instructions regarding flag digitization with MorphoDig
    • One video: https://youtu.be/U0dkjXUbriw
     


More infos
2 files:
Tutorial_data
Tutorial_instructions
Tutorial 07: thickness within objects and scalar normalization 

Difficulty:

Description

    Tutorial 07 includes:

    • One .ntw file (MorphoDig project file).
    • Two .vtk surface files representing the right femurs of a patas monkey and of a baboon.
    • Two .pos (position) files.
    • One .tgp (tag map) file.
    • One .txt file containint the summary of the Normalized thickness scalar array for the two femurs.
    • The present .pdf document.
    • One video: https://youtu.be/LBTbXKGgXEw
     


More infos
2 files:
Tutorial_instructions
Tutorial_data
Tutorial 08: thickness between objects 

Difficulty:

Description

    Tutorial 08 includes:

    • One .ntw (MorphoDig project) file
    • Two .vtk surface files representing the Enamel Dentine Junction (EDJ) and Outer Enamel Surface (OES) of a Neolithic human upper left second molar.
    • Instructions regarding thickness between surface computation with MorphoDig
    • One video : https://youtu.be/_R0UmmigsxE
     


More infos
2 files:
Tutorial_data
Tutorial_instructions
Tutorial 09: curvature, scalar smoothing and normalization 

Difficulty:

Description

    Tutorial 08 includes:

    • One .ntw (MorphoDig project) file
    • One.vtk surface file representing the Enamel Dentine Junction (EDJ) a of a Neolithic human upper left second molar.
    • Instructions regarding curvature scalars, scalar smoothing and scalar normalization
    • One video : https://www.youtube.com/watch?v=OLiIZ5G3zik
     


More infos
2 files:
Tutorial_data
Tutorial_instructions
Tutorial 10 : Open RAW µCT data 

Difficulty:

Description
More infos
file:
Tutorial_data
Tutorial 11: open µCT image sequences 

Difficulty:

Description

    Tutorial 11 contains:

     


More infos
file:
Tutorial_data
Tutorial 12: landmark digitization on µCT data 

Difficulty:

Description

    This tutorial contains:

     


More infos
file:
Tutorial_data
Tutorial 13: reorient, crop and resample µCT data 

Difficulty:

Description
More infos
file:
Tutorial_data
Tutorial 14: mask regions of µCT data 

Difficulty:

Description
More infos
file:
Tutorial_data

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