A 3D geometric morphometric dataset quantifying skeletal variation in birds

Bjarnason, Alexander; Benson, Roger

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2021-03
Volume 07, issue 01
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MorphoMuseuM Volume 07, issue 01
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Original article

A 3D geometric morphometric dataset quantifying skeletal variation in birds

Alexander Bjarnason and Roger Benson

Published online: 09/02/2021

Keywords: birds; geometric morphometrics; macroevolution; Morphology; skeleton

https://doi.org/10.18563/journal.m3.125

References: 86
Cited by: 15

Cite this article: Alexander Bjarnason and Roger Benson, 2021. A 3D geometric morphometric dataset quantifying skeletal variation in birds. MorphoMuseuM 7:e125. doi: 10.18563/journal.m3.125

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Abstract

Macroevolution is integral to understanding the patterns of the diversification of life. As the life sciences increasingly use big data approaches, large multivariate datasets are required to test fundamental macroevolutionary hypotheses. In vertebrate evolution, large datasets have been created to quantify morphological variation, largely focusing on particular areas of the skeleton. We provide a landmarking protocol to quantify morphological variation in skeletal elements across the head, trunk, hindlimb and forelimb using 3-dimensional landmarks and semilandmarks, and present a large pan-skeletal database of bird morphology for 149 taxa across avian phylogeny using CT scan data. This large collection of 3D models and geometric morphometric data is open access and can be used in the future for new research, teaching and outreach. The 3D models and CT scans of the 149 specimens related to this project can be downloaded at MorphoSource (https://www.morphosource.org/projects/00000C420)

Specimens and 3D Data

Menura novaehollandiae FMNH 336751 View specimen

	M3#561 3D model of the left carpometacarpus of the superb lyrebird, Menura novaehollandia (displayed as a mirror image in the 3DHOP viewer). Type: "3D_surfaces" doi: 10.18563/m3.sf.561 state:published	Download 3D surface file
	M3#562 3D model of the mandible of the superb lyrebird, Menura novaehollandiae. Type: "3D_surfaces" doi: 10.18563/m3.sf.562 state:published	Download 3D surface file
	M3#563 3D model of the right coracoid of the superb lyrebird, Menura novaehollandiae. Type: "3D_surfaces" doi: 10.18563/m3.sf.563 state:published	Download 3D surface file
	M3#564 3D model of the right scapula of the superb lyrebird, Menura novaehollandiae. Type: "3D_surfaces" doi: 10.18563/m3.sf.564 state:published	Download 3D surface file
	M3#565 3D model of the right tarsometatarsus of the superb lyrebird, Menura novaehollandiae. Type: "3D_surfaces" doi: 10.18563/m3.sf.565 state:published	Download 3D surface file
	M3#566 3D model of the sternum of the superb lyrebird, Menura novaehollandiae. Type: "3D_surfaces" doi: 10.18563/m3.sf.566 state:published	Download 3D surface file
	M3#567 3D model of the left femur of the superb lyrebird, Menura novaehollandiae (displayed as a mirror image in the 3DHOP viewer). Type: "3D_surfaces" doi: 10.18563/m3.sf.567 state:published	Download 3D surface file
	M3#568 3D model of the skull of the superb lyrebird, Menura novaehollandiae. Type: "3D_surfaces" doi: 10.18563/m3.sf.568 state:published	Download 3D surface file
	M3#569 3D model of the left humerus of the superb lyrebird, Menura novaehollandiae (displayed as a mirror image in the 3DHOP viewer). Type: "3D_surfaces" doi: 10.18563/m3.sf.569 state:published	Download 3D surface file
	M3#570 3D model of the synsacrum of the superb lyrebird, Menura novaehollandiae. Type: "3D_surfaces" doi: 10.18563/m3.sf.570 state:published	Download 3D surface file
	M3#571 3D model of the left radius of the superb lyrebird, Menura novaehollandiae (displayed as a mirror image in the 3DHOP viewer). Type: "3D_surfaces" doi: 10.18563/m3.sf.571 state:published	Download 3D surface file
	M3#572 3D model of the left tibiotarsus of the superb lyrebird, Menura novaehollandiae (displayed as a mirror image in the 3DHOP viewer). Type: "3D_surfaces" doi: 10.18563/m3.sf.572 state:published	Download 3D surface file
	M3#573 3D model of the left ulna of the superb lyrebird, Menura novaehollandiae (displayed as a mirror image in the 3DHOP viewer). Type: "3D_surfaces" doi: 10.18563/m3.sf.573 state:published	Download 3D surface file

Published in Volume 07, issue 01 (2021)

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Aubrey Keirnan, Trevor H. Worthy, Jeroen B. Smaers, Karine Mardon, Andrew N. Iwaniuk and Vera Weisbecker (2022). Not like night and day: the nocturnal letter-winged kite does not differ from diurnal congeners in orbit or endocast morphology. Royal Society Open Science. https://doi.org/10.1098/rsos.220135

Jesús Marugán‐Lobón, Sergio M. Nebreda, Guillermo Navalón and Roger B. J. Benson (2022). Beyond the beak: Brain size and allometry in avian craniofacial evolution. Journal of Anatomy. https://doi.org/10.1111/joa.13555

Talia M. Lowi-Merri, Oliver E. Demuth, Juan Benito, Daniel J. Field, Roger B. J. Benson, Santiago Claramunt and David C. Evans (2023). Reconstructing locomotor ecology of extinct avialans: a case study of Ichthyornis comparing sternum morphology and skeletal proportions . Proceedings of the Royal Society B: Biological Sciences. https://doi.org/10.1098/rspb.2022.2020

Pei‐Chen Kuo, Roger B. J. Benson and Daniel J. Field (2023). The influence of fossils in macroevolutionary analyses of 3D geometric morphometric data: A case study of galloanseran quadrates. Journal of Morphology. https://doi.org/10.1002/jmor.21594

Alexander D. Clark, Han Hu, Roger BJ Benson and Jingmai K. O’Connor (2023). Reconstructing the dietary habits and trophic positions of the Longipterygidae (Aves: Enantiornithes) using neontological and comparative morphological methods. PeerJ. https://doi.org/10.7717/peerj.15139

Pei-Chen Kuo, Guillermo Navalón, Roger B. J. Benson and Daniel J. Field (2024). Macroevolutionary drivers of morphological disparity in the avian quadrate. Proceedings of the Royal Society B: Biological Sciences. https://doi.org/10.1098/rspb.2023.2250

Nicoleta Manuta, Buket Çakar, Ozan Gündemir and Mihaela-Claudia Spataru (2024). Shape and Size Variations of Distal Phalanges in Cattle. Animals. https://doi.org/10.3390/ani14020194

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A 3D geometric morphometric dataset quantifying skeletal variation in birds

Alexander Bjarnason and Roger Benson

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2021-03
Volume 07, issue 01
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ISSN: 2274-0422