The present publication contains the µCT dataset and the 3D models analyzed in the following publication: Mautner, A.-K., A. E. Latimer, U. Fritz, and T. M. Scheyer. An updated description of the osteology of the pancake tortoise Malacochersus tornieri (Testudines: Testudinidae) with special focus on intraspecific variation. Journal of Morphology. https://doi.org/10.1002/jmor.20640 

Malacochersus tornieri ZM 100.102 View specimen

	M3#129 Virtual brain and inner ear endocast of Malacochersus tornieri (ZM 100.102; Zoological Museum of The University of Zurich). This virtual model is accompanied by the 3D dataset. Blue, endocranium; red, blood vessels; purple, semicircular canals; yellow, cranial nerves. Type: "3D_surfaces" doi: 10.18563/m3.sf.129   state:published	Download 3D surface file
	M3#130 3D dataset of skull of Malacochersus tornieri (ZM 100.102) Type: "3D_CT" doi: 10.18563/m3.sf.130   state:published	Download CT data

This contribution contains the 3D model of the holotype of Chambius kasserinensis, the basalmost ‘elephant-shrew’ figured in the following publication: New remains of Chambius kasserinensis from the Eocene of Tunisia and evaluation of proposed affinities for Macroscelidea (Mammalia, Afrotheria). https://doi.org/10.1080/08912963.2017.1297433 

Chambius kasserinensis CBI-1-06 View specimen

M3#146 3D model of the holotype maxilla of Chambius kasserinensis. The 3D surface was extracted manually from the limestone matrix within AVIZO 9.2 Type: "3D_surfaces" doi: 10.18563/m3.sf.146   state:published

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The present 3D Dataset contains the 3D models analyzed in the publication “Systematic and locomotor diversification of the Adapis group (Primates, Adapiformes) in the late Eocene of the Quercy (Southwest France), revealed by humeral remains”. In this paper, twenty humeral specimens from the old and new Quercy collections attributed to the fossil primates Adapis and Palaeolemur are described and analysed together. In this dataset only the scans of the fossils belonging to the collections of Université de Montpellier are provided.
In our paper (Marigó et al., 2019) we provide a qualitative and quantitative analysis of the different humeri, revealing that high variability is present within the “Adapis group” sample. Six different morphotypes are identified, confirming that what has often been called “Adapis parisiensis” is a mix of different species that present different locomotor adaptations. 

Adapis sp. UM ROS 2-95 View specimen

M3#356 Complete right humerus ROS 2-95 attributed to the Adapis group Type: "3D_surfaces" doi: 10.18563/m3.sf.356   state:published

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Adapis sp. UM ROS 2-536 View specimen

M3#357 Proximal end of the right humerus ROS 2-536 attributed to the Adapis group Type: "3D_surfaces" doi: 10.18563/m3.sf.357   state:published

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Adapis sp. UM ROS 2-534 View specimen

M3#358 Distal end of the left humerus ROS 2-534 attributed to the Adapis group Type: "3D_surfaces" doi: 10.18563/m3.sf.358   state:published

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Adapis sp. UM ROS 2-535 View specimen

M3#359 Distal end of the left humerus ROS 2-535 attributed to the Adapis group Type: "3D_surfaces" doi: 10.18563/m3.sf.359   state:published

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Adapis sp. UM ROS 2-80 View specimen

M3#360 Proximal end of the right humerus ROS 2-80 attributed to the Adapis group Type: "3D_surfaces" doi: 10.18563/m3.sf.360   state:published

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Adapis sp. UM ROS 2-79 View specimen

M3#361 Distal end of the right humerus ROS 2-79 attributed to the Adapis group Type: "3D_surfaces" doi: 10.18563/m3.sf.361   state:published

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Adapis sp. UM ECA 1364 View specimen

M3#362 Distal end of the left humerus ECA 1364 attributed to the Adapis group Type: "3D_surfaces" doi: 10.18563/m3.sf.362   state:published

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Adapis sp. UM ACQ-262 View specimen

M3#373 3D model of ACQ 262. Humerus Type: "3D_surfaces" doi: 10.18563/m3.sf373   state:published

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The present 3D Dataset contains the 3D models analyzed in the following publication: Paulina-Carabajal, A., Ezcurra, M., Novas, F., 2019. New information on the braincase and endocranial morphology of the Late Triassic neotheropod Zupaysaurus rougieri using Computed Tomography data. Journal of Vertebrate Paleontology. https://doi.org/10.1080/02724634.2019.1630421
  

Zupaysaurus rougieri PULR 076 View specimen

M3#424 The Zip contains 3 files, which correspond to: PULR_076-M1: Zupaysaurus rougieri skull, braincase and cranial endocast PULR_076-M2: Zupaysaurus rougieri braincase PULR_076-M1: Zupaysaurus rougieri brain and inner ear Type: "3D_surfaces" doi: 10.18563/m3.sf.424   state:published

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The present 3D Dataset contains the 3D models of the skull, brain and inner ear endocast analyzed in “Gnathovorax cabreirai: a new early dinosaur and the origin and initial radiation of predatory dinosaurs”. 

Gnathovorax cabrerai CAPA/UFSM 0009 View specimen

	M3#442 3D model of skull Type: "3D_surfaces" doi: 10.18563/m3.sf.442   state:published	Download 3D surface file
	M3#443 3D model of the braincase Type: "3D_surfaces" doi: 10.18563/m3.sf.443   state:published	Download 3D surface file
	M3#444 Endocast of brain, inner ear, and cranial nerves Type: "3D_surfaces" doi: 10.18563/m3.sf.444   state:published	Download 3D surface file

The present 3D Dataset contains the 3D model of a left dentary with m1-m3 analyzed in “A new fossil of Tayassuidae (Mammalia: Certartiodactyla) from the Pleistocene of northern Brazil”. The 3D model was generated using a laser scanning. 

cf. Pecari tajacu UFSM 11606 View specimen

M3#498 Left dentary with m1-m3 Type: "3D_surfaces" doi: 10.18563/m3.sf.498   state:published

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The present 3D Dataset contains the 3D model of the brain endocast of Neoepiblema acreensis analyzed in “Small within the largest: Brain size and anatomy of the extinct Neoepiblema acreensis, a giant rodent from the Neotropics”. The 3D model was generated using CT-Scanning and techniques of virtual reconstruction.
  

Neoepiblema acreensis UFAC 4515 View specimen

M3#502 Brain endocast of Neoepiblema acreensis Type: "3D_surfaces" doi: 10.18563/m3.sf.502   state:published

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This contribution includes the 3D models of the reconstructed ossicular chain of the cainotheriid Caenomeryx filholi from the late Oligocene locality of Pech Desse (MP28, Quercy, France) described and figured in the publication of Assemat et al. (2020). It represents the oldest ossicular chain reconstruction for a Paleogene terrestrial artiodactyl species. 

Caenomeryx filholi UM PDS 3353 View specimen

M3#508 reconstruction of the middle ear with petrosal, bulla, stapes, incus, malleus Type: "3D_surfaces" doi: 10.18563/m3.sf.508   state:published

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This contribution contains the 3D model(s) described and figured in the following publication: The present 3D Dataset contains the 3D models and CT-Scan slices of the lower jaws and teeth analyzed in “A new prozostrodontian cynodont (Eucynodontia, Probainognathia) from the Upper Triassic of southern Brazil”. https://doi.org/10.1080/02724634.2020.1782415 

Agudotherium gassenae CAPPA/UFSM 0262 View specimen

	M3#546 Left lower jaw and cheek teeth Type: "3D_surfaces" doi: 10.18563/m3.sf.546   state:published	Download 3D surface file
	M3#547 1578 slices Type: "3D_CT" doi: 10.18563/m3.sf.547   state:published	Download CT data

Agudotherium gassenae CAPPA/UFSM 0208 View specimen

	M3#548 right lower jaw Type: "3D_surfaces" doi: 10.18563/m3.sf.548   state:published	Download 3D surface file
	M3#549 CT data of CAPPA_UFSM_0208 Type: "3D_CT" doi: 10.18563/m3.sf.549   state:published	Download CT data

This contribution provides the raw files for the μCT-scan data and renderings of the three-dimensional digital models of two fossil teeth of a geomyin geomorph rodent (Caribeomys merzeraudi), discovered from lower Oligocene deposits of Puerto Rico, San Sebastian Formation (locality LACM Loc. 8060). These fossils were described, figured and discussed in the following publication: Marivaux et al. (2021), An unpredicted ancient colonization of the West Indies by North American rodents: dental evidence of a geomorph from the early Oligocene of Puerto Rico. Papers in Palaeontology. https://doi.org/10.1002/spp2.1388 

Caribeomys merzeraudi LACM 162478 View specimen

	M3#712 Right lower dp4: isolated deciduous premolar. The specimen was scanned with a resolution of 5 µm using a μ-CT-scanning station EasyTom 150 / Rx Solutions (Montpellier RIO Imaging, ISE-M, Montpellier, France). AVIZO 7.1 (Visualization Sciences Group) software was used for visualization, segmentation, and 3D rendering. This isolated tooth was prepared within a “labelfield” module of AVIZO, using the segmentation threshold selection tool. Type: "3D_surfaces" doi: 10.18563/m3.sf.712   state:published	Download 3D surface file
	M3#714 5µm µCT data set . Right lower dp4: isolated deciduous premolar. The specimen was scanned with a resolution of 5 µm using a μ-CT-scanning station EasyTom 150 / Rx Solutions (Montpellier RIO Imaging, ISE-M, Montpellier, France). Type: "3D_CT" doi: 10.18563/m3.sf.714   state:published	Download CT data

Caribeomys merzeraudi LACM 162449 View specimen

	M3#713 Right lower molar (m1 or m2). The specimen was scanned with a resolution of 4.5 µm using a μ-CT-scanning station EasyTom 150 / Rx Solutions (Montpellier RIO Imaging, ISE-M, Montpellier, France). AVIZO 7.1 (Visualization Sciences Group) software was used for visualization, segmentation, and 3D rendering. This isolated tooth was prepared within a “labelfield” module of AVIZO, using the segmentation threshold selection tool. Type: "3D_surfaces" doi: 10.18563/m3.sf.713   state:published	Download 3D surface file
	M3#715 µCT data at 4.5µm Type: "3D_CT" doi: 10.18563/m3.sf.715   state:published	Download CT data

This contribution contains the 3D models described and figured in the following publication: Paulina-Carabajal A and Calvo JO 2021. Re-description of the braincase of the rebbachisaurid sauropod Limaysaurus tessonei and novel endocranial information based on CT scans. Anais da Academia Brasileira de Ciências 93(Suppl. 2): e20200762 https://doi.org/10.1590/0001-3765202120200762 

Limaysaurus tessonei MUCPv-205 View specimen

M3#700 Renderings of the virtually isolate braincase, brain, and right inner ear. Type: "3D_surfaces" doi: 10.18563/m3.sf.700   state:published

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This contribution contains the 3D models of postcranial bones (humerus, ulna, innominate, femur, tibia, astragalus, navicular, and metatarsal III) described and figured in the following publication: “Postcranial morphology of the extinct rodent Neoepiblema (Rodentia: Chinchilloidea): insights into the paleobiology of neoepiblemids”. 

Neoepiblema acreensis UFAC 3549 View specimen

M3#719 UFAC 3549, left humerus missing the proximal region. Type: "3D_surfaces" doi: 10.18563/m3.sf.719   state:published

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Neoepiblema acreensis UFAC 5076 View specimen

M3#720 UFAC 5076, right humerus missing the proximal region. Type: "3D_surfaces" doi: 10.18563/m3.sf.720   state:published

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Neoepiblema acreensis UFAC 1939 View specimen

M3#721 UFAC 1939, right ulna missing the olecranon epiphysis and the distal region. Type: "3D_surfaces" doi: 10.18563/m3.sf.721   state:published

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Neoepiblema acreensis UFAC 3697 View specimen

M3#722 UFAC 3697, right innominate bone. Type: "3D_surfaces" doi: 10.18563/m3.sf.722   state:published

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Neoepiblema acreensis UFAC 2574 View specimen

M3#723 UFAC 2574, proximal region of a left femur. Type: "3D_surfaces" doi: 10.18563/m3.sf.723   state:published

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Neoepiblema acreensis UFAC 2937 View specimen

M3#724 UFAC 2937, right femur with damaged proximal region. Type: "3D_surfaces" doi: 10.18563/m3.sf.724   state:published

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Neoepiblema acreensis UFAC 2210 View specimen

M3#725 UFAC 2210, distal region of a right femur. Type: "3D_surfaces" doi: 10.18563/m3.sf.725   state:published

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Neoepiblema acreensis UFAC 1887 View specimen

M3#726 UFAC 1887, right tibia Type: "3D_surfaces" doi: 10.18563/m3.sf.726   state:published

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Neoepiblema acreensis UFAC 1840 View specimen

M3#727 UFAC 1840, left astragalus. Type: "3D_surfaces" doi: 10.18563/m3.sf.727   state:published

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Neoepiblema acreensis UFAC 2549 View specimen

M3#728 UFAC 2549, right astragalus. Type: "3D_surfaces" doi: 10.18563/m3.sf.728   state:published

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Neoepiblema acreensis UFAC 3672 View specimen

M3#729 UFAC 3672, right navicular. Type: "3D_surfaces" doi: 10.18563/m3.sf.729   state:published

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Neoepiblema acreensis UFAC 2116 View specimen

M3#730 UFAC 2116, left metatarsal III. Type: "3D_surfaces" doi: 10.18563/m3.sf.730   state:published

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Neoepiblema horridula UFAC 3260 View specimen

M3#731 UFAC 3260, fragmented left innominate. Type: "3D_surfaces" doi: 10.18563/m3.sf.731   state:published

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Neoepiblema horridula UFAC 2620 View specimen

M3#732 UFAC 2620, distal region of a right femur. Type: "3D_surfaces" doi: 10.18563/m3.sf.732   state:published

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Neoepiblema horridula UFAC 2737 View specimen

M3#733 UFAC 2737, proximal region of right femur. Type: "3D_surfaces" doi: 10.18563/m3.sf.733   state:published

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Neoepiblema horridula UFAC 3202 View specimen

M3#734 UFAC 3202, right tibia, missing the proximalmost and distal portions. Type: "3D_surfaces" doi: 10.18563/m3.sf.734   state:published

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Neoepiblema horridula UFAC 3212 View specimen

M3#735 UFAC 3212, left astragalus. Type: "3D_surfaces" doi: 10.18563/m3.sf.735   state:published

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The present 3D Dataset contains the 3D models analyzed in Mennecart B., Wazir W.A., Sehgal R.K., Patnaik R., Singh N.P., Kumar N, and Nanda A.C. 2021. New remains of Nalamaeryx (Tragulidae, Mammalia) from the Ladakh Himalaya and their phylogenetical and palaeoenvironmental implications. Historical Biology. https://doi.org/10.1080/08912963.2021.2014479
  

Nalameryx savagei WIMF/A4801 View specimen

M3#766 Nalameryx savagei, Partial lower right jaw preserving m2 and m3. Type: "3D_surfaces" doi: 10.18563/m3.sf.766   state:published

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Nalameryx savagei WIMF/A4802 View specimen

M3#767 Nalameryx savagei, partial lower right jaw preserving m2 and m3 Type: "3D_surfaces" doi: 10.18563/m3.sf.767   state:published

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This contribution contains the 3D models described and figured in the following publication: Kassegne K. E., Mourlam M. J., Guinot G., Amoudji Y. Z., Martin J. E., Togbe K. A., Johnson A. K., Hautier L. 2021. First partial cranium of Togocetus from Kpogamé (Togo) and the protocetid diversity in the Togolese phosphate basin. Annales de Paléontologie, Issue 2, April–June 2021, 102488. https://doi.org/10.1016/j.annpal.2021.102488  

Togocetus cf. traversei ULDG-KPO1 View specimen

	M3#768 The specimen consists of a partial cranium prepared out of a calcareous phosphate matrix. The partial cranium lacks the anterior part of the rostrum, the cranial roof, and most of the basicranium apart from the left zygomatic process of the squamosal. The maxilla, nasal, palatine, pterygoid, alisphenoid, and squamosal bones are preserved, as well as two incomplete dental rows described hereafter. Type: "3D_surfaces" doi: 10.18563/m3.sf.768   state:published	Download 3D surface file
	M3#770 µCT . Resolution: 0.3156mm. This scan can easily be opened with Fiji, MorphoDig, 3DSlicer, or any software that reads .MHD file format. Also, the .RAW file can be opened easily with other software such as Avizo/Amira when providing the correct dimensions (which are enclosed within the file name) Type: "3D_CT" doi: 10.18563/m3.sf.770   state:published	Download CT data

The present 3D Dataset contains the 3D models of the holotype mandible and referred fragmented skull of the new species Amphimoschus xishuiensis analyzed in the article Li, Y.-K., Mennecart, B., Aiglstorfer, M., Ni, X.-J., Li, Q., Deng, T. 2021. The early evolution of cranial appendages in Bovoidea revealed by new species of Amphimoschus (Mammalia: Ruminantia) from China. Zoological Journal of the Linnean Society https://doi.org/10.1093/zoolinnean/zlab053 

Amphimoschus xishuiensis IVPP V 25521.1 View specimen

M3#803 the holotype, a right hemimandible with tooth row p2 to m3 Type: "3D_surfaces" doi: 10.18563/m3.sf.803   state:published

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Amphimoschus xishuiensis IVPP V 25521.2 View specimen

M3#804 referred material, anterior part of a skull with right P4-M3 and left P3-M2 Type: "3D_surfaces" doi: 10.18563/m3.sf.804   state:published

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This contribution contains the 3D models described and figured in the following publication: Georgalis, G.L., G. Guinot, K.E. Kassegne, Y.Z. Amoudji, A.K.C. Johnson, H. Cappetta and L. Hautier. 2021. An assemblage of giant aquatic snakes (Serpentes, Palaeophiidae) from the Eocene of Togo. Swiss Journal of Palaeontology 140, https://doi.org/10.1186/s13358-021-00236-w 

Palaeophis africanus UM KPO 21 View specimen

M3#821 Trunk vertebra UM KPO 21 of Palaeophis africanus Type: "3D_surfaces" doi: 10.18563/m3.sf.821   state:published

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Palaeophis africanus UM KPO 22 View specimen

M3#822 Trunk vertebra UM KPO 22 of Palaeophis africanus from the Eocene of Togo Type: "3D_surfaces" doi: 10.18563/m3.sf.822   state:published

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Palaeophis africanus UM KPO 23 View specimen

M3#823 Trunk vertebra UM KPO 23 of Palaeophis africanus Type: "3D_surfaces" doi: 10.18563/m3.sf.823   state:published

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Palaeophis africanus UM KPO 24 View specimen

M3#824 Trunk vertebra UM KPO 24 of Palaeophis africanus Type: "3D_surfaces" doi: 10.18563/m3.sf.824   state:published

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Palaeophis africanus UM KPO 25 View specimen

M3#825 Trunk vertebra UM KPO 25 of Palaeophis africanus Type: "3D_surfaces" doi: 10.18563/m3.sf.825   state:published

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Palaeophis africanus UM KPO 26 View specimen

M3#826 Trunk vertebra UM KPO 26 of Palaeophis africanus Type: "3D_surfaces" doi: 10.18563/m3.sf.826   state:published

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Palaeophis africanus UM KPO 27 View specimen

M3#827 Trunk vertebra UM KPO 27 of Palaeophis africanus Type: "3D_surfaces" doi: 10.18563/m3.sf.827   state:published

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Palaeophis africanus UM KPO 28 View specimen

M3#828 Trunk vertebra UM KPO 28 of Palaeophis africanus Type: "3D_surfaces" doi: 10.18563/m3.sf.828   state:published

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Palaeophis africanus UM KPO 29 View specimen

M3#829 Trunk vertebra UM KPO 29 of Palaeophis africanus Type: "3D_surfaces" doi: 10.18563/m3.sf.829   state:published

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Palaeophis africanus UM KPO 30 View specimen

M3#830 Trunk vertebra UM KPO 30 of Palaeophis africanus Type: "3D_surfaces" doi: 10.18563/m3.sf.830   state:published

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Palaeophis africanus UM KPO 31 View specimen

M3#831 Trunk vertebra UM KPO 28 of Palaeophis africanus Type: "3D_surfaces" doi: 10.18563/m3.sf.831   state:published

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Palaeophis africanus UM KPO 32 View specimen

M3#832 Trunk vertebra UM KPO 32 of Palaeophis africanus Type: "3D_surfaces" doi: 10.18563/m3.sf.832   state:published

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Palaeophis africanus UM KPO 33 View specimen

M3#833 Trunk vertebra UM KPO 33 of Palaeophis africanus Type: "3D_surfaces" doi: 10.18563/m3.sf.833   state:published

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Palaeophis africanus UM KPO 34 View specimen

M3#839 Trunk vertebra UM KPO 34 of Palaeophis africanus Type: "3D_surfaces" doi: 10.18563/m3.sf.839   state:published

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Palaeophis africanus UM KPO 35 View specimen

M3#840 Trunk vertebra UM KPO 35 of Palaeophis africanus Type: "3D_surfaces" doi: 10.18563/m3.sf.840   state:published

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Palaeophis africanus UM KPO 36 View specimen

M3#841 Trunk vertebra UM KPO 36 of Palaeophis africanus Type: "3D_surfaces" doi: 10.18563/m3.sf.841   state:published

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Palaeophis africanus UM KPO 37 View specimen

M3#842 Trunk vertebra UM KPO 37 of Palaeophis africanus Type: "3D_surfaces" doi: 10.18563/m3.sf.842   state:published

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The present 3D Dataset contains the 3D models of Carboniferous-Permian chondrichthyan neurocrania analyzed in “Phylogenetic implications of the systematic reassessment of Xenacanthiformes and ‘Ctenacanthiformes’ (Chondrichthyes) neurocrania from the Carboniferous-Permian Autun Basin (France)”. 

cf. Triodus sp MNHN.F.AUT811 View specimen

M3#834 MHNH.F.AUT811 (isolated neurocranium) in dorsal view. Type: "3D_surfaces" doi: 10.18563/m3.sf.834   state:published

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indet indet MNHN.F.AUT812 View specimen

M3#835 MHNH.F.AUT812 (isolated neurocranium) in dorsal view. Type: "3D_surfaces" doi: 10.18563/m3.sf.835   state:published

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indet indet MNHN.F.AUT813 View specimen

M3#836 MHNH.F.AUT813 (isolated neurocranium) in dorsal view. Type: "3D_surfaces" doi: 10.18563/m3.sf.836   state:published

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cf. Triodus sp MNHN.F.AUT814 View specimen

M3#837 MHNH.F.AUT814 (isolated neurocranium) in dorsal view. Type: "3D_surfaces" doi: 10.18563/m3.sf.837   state:published

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cf. Triodus sp MHNE.2021.9.1 View specimen

M3#838 MHNE.2021.9.1 (isolated neurocranium) in dorsal view. Type: "3D_surfaces" doi: 10.18563/m3.sf.838   state:published

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The present 3D Dataset contains the 3D model of a skull analyzed in “A Puma concolor (Carnivora: Felidae) in the Middle-Late Holocene landscapes of the Brazilian Northeast (Bahia): submerged cave deposits and stable isotopes”. The 3D model was generated by photogrammetry. 

Puma concolor MN 57461 View specimen

M3#843 Cranium Type: "3D_surfaces" doi: 10.18563/m3.sf.843   state:published

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The present 3D Dataset contains the 3D model analyzed in Gaetano, L. C., Abdala, F., Seoane, F. D., Tartaglione, A., Schulz, M., Otero, A., Leardi, J. M., Apaldetti, C., Krapovickas, V., and Steinbach, E. 2021. A new cynodont from the Upper Triassic Los Colorados Formation (Argentina, South America) reveals a novel paleobiogeographic context for mammalian ancestors. Scientific Reports. 

Tessellatia bonapartei PULR-V121 View specimen

M3#960 3D surface model of PULR-V121 Type: "3D_surfaces" doi: 10.18563/m3.sf.960   state:published

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The present 3D Dataset contains the 3D models analyzed in Benites-Palomino A., Velez-Juarbe J., Altamirano-Sierra A., Collareta A., Carrillo-Briceño J., and Urbina M. 2022. Sperm whales (Physeteroidea) from the Pisco Formation, Peru, and their Trophic role as fat-sources for Late Miocene sharks.
  

Scaphokogia cochlearis MUSM 978 View specimen

M3#977 juvenile Scaphokogia cochlearis Type: "3D_surfaces" doi: 10.18563/m3.sf.977   state:published

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